Allen Song

Overview:

The research in our lab is concerned with advancing structural and functional MRI methodologies (e.g. fast and high-resolution imaging techniques) for human brain imaging. We also aim to improve our understanding of functional brain signals, including spatiotemporal characterizations of the blood oxygenation level dependent contrast and alternative contrast mechanisms that are more directly linked to the neuronal activities. Additional effort is invested in applying and validating the developed methods to study human functional neuroanatomy.

Positions:

Professor in Radiology

Radiology
School of Medicine

Director of the Center for Brain Imaging and Analysis

Duke-UNC Center for Brain Imaging and Analysis
School of Medicine

Professor in Psychiatry and Behavioral Sciences

Psychiatry & Behavioral Sciences
School of Medicine

Professor in Neurobiology

Neurobiology
School of Medicine

Faculty Network Member of the Duke Institute for Brain Sciences

Duke Institute for Brain Sciences
Institutes and Provost's Academic Units

Member of the Duke Cancer Institute

Duke Cancer Institute
School of Medicine

Education:

Ph.D. 1995

Medical College of Wisconsin

Visiting Fellow, Laboratory Of Brain And Cognition

National Institutes of Health

Assistant Professor of Radiology, Tenure Track, Radiology

Emory University

Grants:

High Fidelity Diffusion MRI for Children with Cerebral Palsy in Stem Cell Therapy

Administered By
Duke-UNC Center for Brain Imaging and Analysis
Awarded By
National Institutes of Health
Role
Principal Investigator
Start Date
End Date

Role of cannabis on HIV-related cognitive impairment: a brain connectomics study

Administered By
Psychiatry & Behavioral Sciences, Addiction
Awarded By
National Institutes of Health
Role
Co Investigator
Start Date
End Date

Neuroimaging of Visual Attention in Aging

Administered By
Psychiatry & Behavioral Sciences, Geriatric Behavioral Health
Awarded By
National Institutes of Health
Role
Co Investigator
Start Date
End Date

MRI data fusion to investigate effects of drug abuse on HIV neurological complications

Administered By
Psychiatry & Behavioral Sciences, Addiction
Awarded By
National Institutes of Health
Role
Co Investigator
Start Date
End Date

NCANDA Research Project Site: Duke

Administered By
Psychiatry, Child & Family Mental Health & Developmental Neuroscience
Awarded By
National Institutes of Health
Role
Collaborator
Start Date
End Date

Publications:

Simultaneous and inherent correction of B0 and eddy-current induced distortions in high-resolution diffusion MRI using reversed polarity gradients and multiplexed sensitivity encoding (RPG-MUSE).

In diffusion MRI (dMRI), static magnetic field (B0) inhomogeneity and time varying gradient eddy currents induce spatial distortions in reconstructed images. These distortions are exacerbated when high spatial resolutions are used, and many field-mapping based correction techniques often only acquire maps of static B0 distortion, which are not adequate for correcting eddy current induced image distortions. This report presents a novel technique, termed RPG-MUSE, for achieving distortion-free high-resolution diffusion MRI by integrating reversed polarity gradients (RPG) into the multi-shot echo planar imaging acquisition scheme used in multiplexed sensitivity encoding (MUSE). By alternating the phase encoding direction between shots in both baseline and diffusion-weighted acquisitions, maps of both static B0 and eddy current induced field inhomogeneities can be inherently derived, without the need for additional data acquisition. Through both 2D and 3D encoded dMRI acquisitions, it is shown that an RPG-MUSE reconstruction can simultaneously achieve high spatial resolution, high spatial fidelity, and subsequently, high accuracy in diffusion metrics.
Authors
Bruce, IP; Petty, C; Song, AW
MLA Citation
URI
https://scholars.duke.edu/individual/pub1350863
PMID
30243955
Source
pubmed
Published In
Neuroimage
Volume
183
Published Date
Start Page
985
End Page
993
DOI
10.1016/j.neuroimage.2018.09.055

Human brain diffusion tensor imaging at submillimeter isotropic resolution on a 3Tesla clinical MRI scanner.

The advantages of high-resolution diffusion tensor imaging (DTI) have been demonstrated in a recent post-mortem human brain study (Miller et al., NeuroImage 2011;57(1):167-181), showing that white matter fiber tracts can be much more accurately detected in data at a submillimeter isotropic resolution. To our knowledge, in vivo human brain DTI at a submillimeter isotropic resolution has not been routinely achieved yet because of the difficulty in simultaneously achieving high resolution and high signal-to-noise ratio (SNR) in DTI scans. Here we report a 3D multi-slab interleaved EPI acquisition integrated with multiplexed sensitivity encoded (MUSE) reconstruction, to achieve high-quality, high-SNR and submillimeter isotropic resolution (0.85×0.85×0.85mm(3)) in vivo human brain DTI on a 3Tesla clinical MRI scanner. In agreement with the previously reported post-mortem human brain DTI study, our in vivo data show that the structural connectivity networks of human brains can be mapped more accurately and completely with high-resolution DTI as compared with conventional DTI (e.g., 2×2×2mm(3)).
Authors
Chang, H-C; Sundman, M; Petit, L; Guhaniyogi, S; Chu, M-L; Petty, C; Song, AW; Chen, N-K
MLA Citation
Chang, Hing-Chiu, et al. “Human brain diffusion tensor imaging at submillimeter isotropic resolution on a 3Tesla clinical MRI scanner..” Neuroimage, vol. 118, Sept. 2015, pp. 667–75. Pubmed, doi:10.1016/j.neuroimage.2015.06.016.
URI
https://scholars.duke.edu/individual/pub1074724
PMID
26072250
Source
pubmed
Published In
Neuroimage
Volume
118
Published Date
Start Page
667
End Page
675
DOI
10.1016/j.neuroimage.2015.06.016

Functional neuroimaging of treatment effects in psychiatry: methodological challenges and recommendations.

Functional magnetic resonance imaging (fMRI) has helped to elucidate the neurobiological bases of psychiatric and neurodevelopmental disorders by localizing etiologically-relevant aberrations in brain function. Functional MRI also has shown great promise to help understand potential mechanisms of action of effective treatments for a range of psychiatric and neurodevelopmental disorders, including mood and anxiety disorders, schizophrenia, and autism. However, the use of fMRI to probe intervention effects in psychiatry is associated with unique methodological considerations, including the psychometric properties of repeated fMRI scans, how to assess potential relations between the effects of an intervention on symptoms and on specific brain activation patterns, and how to best make causal inferences about intervention effects on brain function. Additionally, the study of treatment effects in neurodevelopmental disorders presents additional unique challenges related to brain maturation, analysis methods, and the potential for motion artifacts. We review these methodological considerations and provide recommendations for best practices for each of these topics.
Authors
Dichter, GS; Sikich, L; Song, A; Voyvodic, J; Bodfish, JW
MLA Citation
Dichter, Gabriel S., et al. “Functional neuroimaging of treatment effects in psychiatry: methodological challenges and recommendations..” Int J Neurosci, vol. 122, no. 9, Sept. 2012, pp. 483–93. Pubmed, doi:10.3109/00207454.2012.678446.
URI
https://scholars.duke.edu/individual/pub799549
PMID
22471393
Source
pubmed
Published In
Int J Neurosci
Volume
122
Published Date
Start Page
483
End Page
493
DOI
10.3109/00207454.2012.678446

Cortical depth dependence and implications on the neuronal specificity of the functional apparent diffusion coefficient contrast.

Although the blood oxygenation level-dependent (BOLD) contrast is widely used in functional MRI (fMRI), its spatial specificity is compromised by the diversity of the participating vasculature, including large draining veins. Previous studies have shown that an alternative contrast mechanism based on functional changes of the apparent diffusion coefficient (ADC) can be sensitized to small vessels more closely tied to the sites of neural activity. Such an improved functional localization, however, has not yet been demonstrated at the cortical level in humans. Here, we investigate the cortical depth dependence and neuronal specificity of the functional ADC contrast in the human primary visual cortex by performing high-resolution BOLD and ADC imaging during visual stimulation at 4 T. Our results show that, by using optimal parameters, the functional ADC changes are significantly higher in the middle cortical layers, whereas the BOLD signal changes are higher at the cortical surface and vary much less significantly across the cortex. These results are in good agreement with previous studies performed in anesthetized cats at 9.4 T and demonstrate the improved spatial specificity of the functional ADC contrast as compared to the BOLD contrast.
Authors
Truong, T-K; Song, AW
MLA Citation
Truong, Trong-Kha, and Allen W. Song. “Cortical depth dependence and implications on the neuronal specificity of the functional apparent diffusion coefficient contrast..” Neuroimage, vol. 47, no. 1, Aug. 2009, pp. 65–68. Pubmed, doi:10.1016/j.neuroimage.2009.04.045.
URI
https://scholars.duke.edu/individual/pub736839
PMID
19379817
Source
pubmed
Published In
Neuroimage
Volume
47
Published Date
Start Page
65
End Page
68
DOI
10.1016/j.neuroimage.2009.04.045

Synchronized detection of minute electrical currents with MRI using Lorentz effect imaging.

The blood oxygenation level-dependent (BOLD) effect is the most commonly used contrast mechanism in functional magnetic resonance imaging (fMRI), due to its relatively high spatial resolution and sensitivity. However, the ability of BOLD fMRI to accurately localize neuronal activation in space and time is limited by the inherent hemodynamic modulation. There is hence a need to develop alternative MRI methods that can directly image neuroelectric activity, thereby achieving both a high temporal resolution and spatial specificity as compared to conventional BOLD fMRI. In this paper, we extend the Lorentz effect imaging technique, which can detect spatially incoherent yet temporally synchronized minute electrical activity in a strong magnetic field, and demonstrate its feasibility for imaging randomly oriented electrical currents on the order of microamperes with a temporal resolution on the order of milliseconds in gel phantoms. This constitutes a promising step towards its application to direct imaging of neuroelectric activity in vivo, which has the same order of current density and temporal synchrony.
Authors
Truong, T-K; Wilbur, JL; Song, AW
MLA Citation
Truong, Trong-Kha, et al. “Synchronized detection of minute electrical currents with MRI using Lorentz effect imaging..” J Magn Reson, vol. 179, no. 1, Mar. 2006, pp. 85–91. Pubmed, doi:10.1016/j.jmr.2005.11.012.
URI
https://scholars.duke.edu/individual/pub736847
PMID
16343959
Source
pubmed
Published In
Journal of Magnetic Resonance (San Diego, Calif. : 1997)
Volume
179
Published Date
Start Page
85
End Page
91
DOI
10.1016/j.jmr.2005.11.012