Qing Cheng
Overview:
My research has been focusing on the development of methodologies and strategies to address the general question of human cancer heterogeneity and complexity, recognizing that clinical outcomes reflect a combination of contribution from the actual tumor but also the environment in which the tumor resides. By understanding who is at risk for recurrence, who is likely to respond to a given agent or regimen, and who is likely to exhibit an adverse event associated with a particular therapy, it will be possible to tailor therapeutic strategies to the characteristics of the individual patient as opposed to relying on the results of studies with heterogeneous populations of patients.
I made the original observation that gene copy number alterations (CNAs) in malignant cells can quantitatively affect gene function (Nat Genet 2005), and the contribution of this work to the field of cancer pharmacogenomics and personalized medicine was highly recognized by a "NEWS AND VIEWS" paper of Nature Genetics, in 2005. I demonstrated that clinical phenotypes can be affected by multiple forms of alterations (methylation, mutation, CNA) (Am J Hum Genet 2006), and genome-scan of CNAs followed by pathway analysis could uncover the novel gene interactions (Nat Med 2011). We developed a methodology that compiled a large collection of genomic data (Breast Cancer Res 2012) and demonstrated that uniquely characteristic of a clinical phenotype, such as dormancy, could be accessed using gene signature, a collection of multiple genetic alterations (Breast Cancer Res 2014).
I made the original observation that gene copy number alterations (CNAs) in malignant cells can quantitatively affect gene function (Nat Genet 2005), and the contribution of this work to the field of cancer pharmacogenomics and personalized medicine was highly recognized by a "NEWS AND VIEWS" paper of Nature Genetics, in 2005. I demonstrated that clinical phenotypes can be affected by multiple forms of alterations (methylation, mutation, CNA) (Am J Hum Genet 2006), and genome-scan of CNAs followed by pathway analysis could uncover the novel gene interactions (Nat Med 2011). We developed a methodology that compiled a large collection of genomic data (Breast Cancer Res 2012) and demonstrated that uniquely characteristic of a clinical phenotype, such as dormancy, could be accessed using gene signature, a collection of multiple genetic alterations (Breast Cancer Res 2014).
Positions:
Associate Professor in Surgery
Surgery, Surgical Sciences
School of Medicine
Member of the Duke Cancer Institute
Duke Cancer Institute
School of Medicine
Education:
Ph.D. 2001
National University of Singapore (Singapore)
Postdoctoral Research Associate
St. Jude Children's Research Hospital
Grants:
Publications:
Theoretical and experimental verification of acoustic focusing in metal cylinder structure
We report the realization of a multifocal acoustic focusing lens using a simple metal cylinder structure immersed in water, as determined both experimentally and theoretically. The acoustic waves can be focused on one or more points, because the Mie-resonance modes are excited in the cylinder structure. The acoustic pressure fields measured in the Schlieren imaging system agree with the results calculated using the acoustic scattering theory. Interesting applications of multifocal focusing in the acoustic encryption communication are further discussed. Our work should be helpful in understanding the focusing mechanism and experimentally measuring the acoustic phenomena in cylinder structures.
MLA Citation
Xia, J. P., et al. “Theoretical and experimental verification of acoustic focusing in metal cylinder structure.” Applied Physics Express, vol. 9, no. 5, May 2016. Scopus, doi:10.7567/APEX.9.057301.
URI
https://scholars.duke.edu/individual/pub1501548
Source
scopus
Published In
Applied Physics Express
Volume
9
Published Date
DOI
10.7567/APEX.9.057301
Oncofetal protein glypican-3 is a biomarker and critical regulator of function for neuroendocrine cells in prostate cancer.
Neuroendocrine (NE) cells comprise ~1% of epithelial cells in benign prostate and prostatic adenocarcinoma (PCa). However, they become enriched in hormonally treated and castration-resistant PCa (CRPC). In addition, close to 20% of hormonally treated tumors recur as small cell NE carcinoma (SCNC), composed entirely of NE cells, which may be the result of clonal expansion or lineage plasticity. Since NE cells do not express androgen receptors (ARs), they are resistant to hormonal therapy and contribute to therapy failure. Here, we describe the identification of glypican-3 (GPC3) as an oncofetal cell surface protein specific to NE cells in prostate cancer. Functional studies revealed that GPC3 is critical to the viability of NE tumor cells and tumors displaying NE differentiation and that it regulates calcium homeostasis and signaling. Since our results demonstrate that GPC3 is specifically expressed by NE cells, patients with confirmed SCNC may qualify for GPC3-targeted therapy which has been developed in the context of liver cancer and displays minimal toxicity due to its tumor-specific expression. © 2023 The Pathological Society of Great Britain and Ireland.
Authors
Butler, W; Xu, L; Zhou, Y; Cheng, Q; Hauck, JS; He, Y; Marek, R; Hartman, Z; Cheng, L; Yang, Q; Wang, M-E; Chen, M; Zhang, H; Armstrong, AJ; Huang, J
MLA Citation
Butler, William, et al. “Oncofetal protein glypican-3 is a biomarker and critical regulator of function for neuroendocrine cells in prostate cancer.” J Pathol, vol. 260, no. 1, May 2023, pp. 43–55. Pubmed, doi:10.1002/path.6063.
URI
https://scholars.duke.edu/individual/pub1564775
PMID
36752189
Source
pubmed
Published In
J Pathol
Volume
260
Published Date
Start Page
43
End Page
55
DOI
10.1002/path.6063
The Needle in the Haystack: The Presence of Castrate-resistant Prostate Cancer Cells in Hormone-naïve Prostate Cancer.
Authors
Ali, A; Baena, E
MLA Citation
Ali, Amin, and Esther Baena. “The Needle in the Haystack: The Presence of Castrate-resistant Prostate Cancer Cells in Hormone-naïve Prostate Cancer.” Eur Urol, vol. 81, no. 5, May 2022, pp. 456–57. Pubmed, doi:10.1016/j.eururo.2022.02.004.
URI
https://scholars.duke.edu/individual/pub1569890
PMID
35221165
Source
pubmed
Published In
Eur Urol
Volume
81
Published Date
Start Page
456
End Page
457
DOI
10.1016/j.eururo.2022.02.004
Institutional ethnography - a primer.
This review introduces a qualitative methodology called institutional ethnography (IE) to healthcare professionals interested in studying complex social healthcare systems. We provide the historical context in which IE was developed, and explain the principles and terminology in IE for the novice researcher. Through the use of worked examples, the reader will be able to appreciate how IE can be used to approach research questions in the healthcare system that other methods would be unable to answer. We show how IE and qualitative research methods maintain quality and rigour in research findings. We hope to demonstrate to healthcare professionals and researchers that healthcare systems can be analysed as social organisations, and IE may be used to identify and understand how higher-level processes and policies affect day-to-day clinical work. This understanding may allow the formulation and implementation of actionable improvements to solve problems on the ground.
MLA Citation
Foo, Yang Yann, et al. “Institutional ethnography - a primer.” Singapore Med J, vol. 62, no. 10, Oct. 2021, pp. 507–12. Pubmed, doi:10.11622/smedj.2021199.
URI
https://scholars.duke.edu/individual/pub1504322
PMID
35001127
Source
pubmed
Published In
Singapore Med J
Volume
62
Published Date
Start Page
507
End Page
512
DOI
10.11622/smedj.2021199
The effect of latent plasticity on the shape recovery of a shape memory vitrimer
The utility of covalent crosslinkers as permanent netpoints has enabled robust shape memory behaviour in shape memory thermosets (SMTs). Having this permanent crosslinked structure, alternatively, challenges the reprogramming of permanent shapes. The introduction of vitrimeric type dynamic chemistry into SMTs allows for reconfiguration of crosslinked network and thus reprogramming of permanent shapes. However, adding this adaptability/plasticity to the network could potentially affect the shape memory behaviour, especially when the shape programming is conducted at a temperature that activates the network plasticity as well. Herein, to address the potential influence of network plasticity, we studied the shape memory behaviour of a shape memory vitrimer (SMV) that possesses a low network activation energy (Ea) of 33 kJ/mol, which indicates a relatively high plasticity index during shape programming. As we found, there is a dependence of shape recovery on the shape-programming time: a longer programming time leads to a poorer shape recovery. This negative correlation results from the dissipation of stored elastic energy at local strained regions associated with shape programming. We further related the loss of elastic energy to the stress-relaxation that results from chain exchanges. Accordingly, the dependence can be analyzed with an analog of stress-relaxation model. We reasoned that this latent plasticity associated with dynamic chain exchanges is ubiquitous in SMVs, and so one needs to carefully evaluate the reprogramming temperature and time when performing shape memory studies on SMVs.
MLA Citation
Chen, F., et al. “The effect of latent plasticity on the shape recovery of a shape memory vitrimer.” European Polymer Journal, vol. 147, Mar. 2021. Scopus, doi:10.1016/j.eurpolymj.2021.110304.
URI
https://scholars.duke.edu/individual/pub1474826
Source
scopus
Published In
European Polymer Journal
Volume
147
Published Date
DOI
10.1016/j.eurpolymj.2021.110304

Associate Professor in Surgery
Contact:
203 Research Drive, 452 Msrb1, Durham, NC 27710
Duke Box 2606, Durham, NC 27710